Computational pack#

This page is generated from the code and must not be edited by hand.

Simulation, numerical methods, scheduling and scientific file formats.

Senses: 27
Spellings: 186
Kinds of thing: acquisition, condition, file_role, format, measurement, software, statistic, technique
Pack: computational version 2, by Ingence, under the MIT licence
Digest of its words: 9cd534fa4e0c3e0023c02f8f7c6f89dd

Words#

Spelling	Means	Kind	Notes
`ab-initio`	quantum chemistry (`quantum_chemistry`)	`technique`
`abaqus`	finite element (`finite_element`)	`technique`
`abinitio`	quantum chemistry (`quantum_chemistry`)	`technique`
`abm`	agent based (`agent_based`)	`technique`
`agent-based`	agent based (`agent_based`)	`technique`
`agentbased`	agent based (`agent_based`)	`technique`
`airflow`	workflow manager (`workflow_manager`)	`software`
`amber`	molecular dynamics (`molecular_dynamics`)	`technique`
`annealing`	ensemble (`ensemble`)	`condition`
`apptainer`	container runtime (`container_runtime`)	`software`
`arivis`	image software (`image_software`)	`software`
`bc`	boundary condition (`boundary_condition`)	`condition`
`bioconductor`	scientific library (`scientific_library`)	`software`
`boundary-condition`	boundary condition (`boundary_condition`)	`condition`
`boundarycondition`	boundary condition (`boundary_condition`)	`condition`
`branch_name`	version control tool (`version_control_tool`)	`software`
`bsub`	scheduler (`scheduler`)	`software`
`cellprofiler`	image software (`image_software`)	`software`
`cellularautomaton`	agent based (`agent_based`)	`technique`
`charmm`	molecular dynamics (`molecular_dynamics`)	`technique`
`checkpoint`	checkpoint (`checkpoint`)	`file_role`
`ckpt`	checkpoint (`checkpoint`)	`file_role`
`cmake`	workflow manager (`workflow_manager`)	`software`
`commit_ref`	version control tool (`version_control_tool`)	`software`
`comsol_run`	finite element (`finite_element`)	`technique`
`conda_env`	container runtime (`container_runtime`)	`software`
`condor`	scheduler (`scheduler`)	`software`
`converged`	convergence (`convergence`)	`statistic`
`convergence`	convergence (`convergence`)	`statistic`
`core`	compute resource (`compute_resource`)	`measurement`
`cores`	compute resource (`compute_resource`)	`measurement`
`cpp`	language (`language`)	`software`	also spelled by C or C++ source (format)
`cpu`	compute resource (`compute_resource`)	`measurement`
`cwl`	workflow manager (`workflow_manager`)	`software`
`dft`	quantum chemistry (`quantum_chemistry`)	`technique`
`dirichlet`	boundary condition (`boundary_condition`)	`condition`
`discretisation`	mesh (`mesh`)	`measurement`
`discretization`	mesh (`mesh`)	`measurement`
`docker`	container runtime (`container_runtime`)	`software`
`dt`	timestep (`timestep`)	`measurement`
`dump_file`	trajectory (`trajectory`)	`acquisition`
`elements_mesh`	mesh (`mesh`)	`measurement`
`ensemble`	ensemble (`ensemble`)	`condition`
`equilibration`	ensemble (`ensemble`)	`condition`
`fem`	finite element (`finite_element`)	`technique`
`fenics`	finite element (`finite_element`)	`technique`
`fig`	MATLAB figure (`matlab_figure`)	`format`	read only as a file extension, after a dot; also spelled by figure (file_role)
`fiji`	image software (`image_software`)	`software`
`finiteelement`	finite element (`finite_element`)	`technique`
`fortran`	language (`language`)	`software`
`frames_sim`	trajectory (`trajectory`)	`acquisition`
`gaussian_calc`	quantum chemistry (`quantum_chemistry`)	`technique`
`ggplot`	scientific library (`scientific_library`)	`software`
`gibbs_sampling`	monte carlo (`monte_carlo`)	`technique`
`git`	version control tool (`version_control_tool`)	`software`
`gpu`	compute resource (`compute_resource`)	`measurement`
`grid`	mesh (`mesh`)	`measurement`
`grid-search`	parameter sweep (`parameter_sweep`)	`condition`
`gridsearch`	parameter sweep (`parameter_sweep`)	`condition`
`gromacs`	molecular dynamics (`molecular_dynamics`)	`technique`
`h5`	array format (`array_format`)	`format`
`hartreefock`	quantum chemistry (`quantum_chemistry`)	`technique`
`hdf5`	array format (`array_format`)	`format`
`hf_qc`	quantum chemistry (`quantum_chemistry`)	`technique`
`huygens`	image software (`image_software`)	`software`
`ic`	initial condition (`initial_condition`)	`condition`
`icy`	image software (`image_software`)	`software`
`ilastik_sw`	image software (`image_software`)	`software`
`imagej`	image software (`image_software`)	`software`
`imaris`	image software (`image_software`)	`software`
`initial-condition`	initial condition (`initial_condition`)	`condition`
`initialcondition`	initial condition (`initial_condition`)	`condition`
`insilico_run`	simulation (`simulation`)	`technique`
`integrator`	timestep (`timestep`)	`measurement`
`iteration_count`	convergence (`convergence`)	`statistic`
`java_lang`	language (`language`)	`software`
`javascript`	language (`language`)	`software`
`jax`	scientific library (`scientific_library`)	`software`
`jobid`	compute resource (`compute_resource`)	`measurement`
`julia`	language (`language`)	`software`
`lammps`	molecular dynamics (`molecular_dynamics`)	`technique`
`lattice`	mesh (`mesh`)	`measurement`
`lsf`	scheduler (`scheduler`)	`software`
`luigi`	workflow manager (`workflow_manager`)	`software`
`make`	workflow manager (`workflow_manager`)	`software`
`mat`	array format (`array_format`)	`format`	read only as a file extension, after a dot
`matlab`	language (`language`)	`software`
`mc`	monte carlo (`monte_carlo`)	`technique`
`mcmc`	monte carlo (`monte_carlo`)	`technique`
`md`	molecular dynamics (`molecular_dynamics`)	`technique`	declared ambiguous with markdown (format)
`mercurial`	version control tool (`version_control_tool`)	`software`
`mesh`	mesh (`mesh`)	`measurement`
`mesh_solver`	finite element (`finite_element`)	`technique`
`metamorph`	image software (`image_software`)	`software`
`metropolis`	monte carlo (`monte_carlo`)	`technique`
`micromanager`	image software (`image_software`)	`software`
`model`	trained classifier (`trained_classifier`)	`format`	read only as a file extension, after a dot; also spelled by fit (statistic)
`module_load`	container runtime (`container_runtime`)	`software`
`moleculardynamics`	molecular dynamics (`molecular_dynamics`)	`technique`
`monte-carlo`	monte carlo (`monte_carlo`)	`technique`
`montecarlo`	monte carlo (`monte_carlo`)	`technique`
`mpi`	compute resource (`compute_resource`)	`measurement`
`n5`	array format (`array_format`)	`format`	read only as a file extension, after a dot
`namd`	molecular dynamics (`molecular_dynamics`)	`technique`
`napari`	image software (`image_software`)	`software`
`nc`	array format (`array_format`)	`format`	read only as a file extension, after a dot
`netcdf`	array format (`array_format`)	`format`	read only as a file extension, after a dot
`neumann`	boundary condition (`boundary_condition`)	`condition`
`nextflow`	workflow manager (`workflow_manager`)	`software`
`nis_elements`	image software (`image_software`)	`software`
`node`	compute resource (`compute_resource`)	`measurement`	also spelled by workstation (instrument)
`nodes`	compute resource (`compute_resource`)	`measurement`
`nodes_mesh`	mesh (`mesh`)	`measurement`
`npt`	ensemble (`ensemble`)	`condition`
`npy`	array format (`array_format`)	`format`
`npz`	array format (`array_format`)	`format`
`numpy`	scientific library (`scientific_library`)	`software`
`nve`	ensemble (`ensemble`)	`condition`
`nvt`	ensemble (`ensemble`)	`condition`
`omero`	image software (`image_software`)	`software`
`openmm`	molecular dynamics (`molecular_dynamics`)	`technique`
`orca`	quantum chemistry (`quantum_chemistry`)	`technique`
`pandas`	scientific library (`scientific_library`)	`software`
`parameter-sweep`	parameter sweep (`parameter_sweep`)	`condition`
`paramsweep`	parameter sweep (`parameter_sweep`)	`condition`
`partition`	compute resource (`compute_resource`)	`measurement`
`pbs`	scheduler (`scheduler`)	`software`	also spelled by buffer (reagent)
`periodic`	boundary condition (`boundary_condition`)	`condition`
`perl`	language (`language`)	`software`
`podman`	container runtime (`container_runtime`)	`software`
`prefect`	workflow manager (`workflow_manager`)	`software`
`production_run`	ensemble (`ensemble`)	`condition`
`psi4`	quantum chemistry (`quantum_chemistry`)	`technique`
`python`	language (`language`)	`software`
`pytorch`	scientific library (`scientific_library`)	`software`
`qsub`	scheduler (`scheduler`)	`software`
`quantumespresso`	quantum chemistry (`quantum_chemistry`)	`technique`
`queue_name`	compute resource (`compute_resource`)	`measurement`
`qupath`	image software (`image_software`)	`software`
`r_lang`	language (`language`)	`software`
`rank`	compute resource (`compute_resource`)	`measurement`
`residual_sim`	convergence (`convergence`)	`statistic`
`restart`	checkpoint (`checkpoint`)	`file_role`
`resume_state`	checkpoint (`checkpoint`)	`file_role`
`rproj`	RStudio project (`rstudio_project`)	`format`
`sbatch`	scheduler (`scheduler`)	`software`
`scan_params`	parameter sweep (`parameter_sweep`)	`condition`
`scanpy`	scientific library (`scientific_library`)	`software`
`scikit`	scientific library (`scientific_library`)	`software`
`scipy`	scientific library (`scientific_library`)	`software`
`seed_state`	initial condition (`initial_condition`)	`condition`
`seurat`	scientific library (`scientific_library`)	`software`
`sge`	scheduler (`scheduler`)	`software`
`shell_lang`	language (`language`)	`software`
`sim`	simulation (`simulation`)	`technique`	declared ambiguous with structured illumination (technique)
`simulated`	simulation (`simulation`)	`technique`
`simulation`	simulation (`simulation`)	`technique`
`singularity`	container runtime (`container_runtime`)	`software`
`sklearn`	scientific library (`scientific_library`)	`software`
`slurm`	scheduler (`scheduler`)	`software`
`snakemake`	workflow manager (`workflow_manager`)	`software`
`snapshot_sim`	trajectory (`trajectory`)	`acquisition`
`srun`	scheduler (`scheduler`)	`software`
`startingconfig`	initial condition (`initial_condition`)	`condition`
`statefile`	checkpoint (`checkpoint`)	`file_role`
`stepsize_sim`	timestep (`timestep`)	`measurement`
`svn_tool`	version control tool (`version_control_tool`)	`software`
`sweep`	parameter sweep (`parameter_sweep`)	`condition`	also spelled by protocol step (acquisition)
`synthetic_data`	simulation (`simulation`)	`technique`
`tag_ref`	version control tool (`version_control_tool`)	`software`
`tensorflow`	scientific library (`scientific_library`)	`software`
`thread`	compute resource (`compute_resource`)	`measurement`
`threads`	compute resource (`compute_resource`)	`measurement`
`tidyverse`	scientific library (`scientific_library`)	`software`
`time-step`	timestep (`timestep`)	`measurement`
`timestep`	timestep (`timestep`)	`measurement`
`tolerance`	convergence (`convergence`)	`statistic`
`torque`	scheduler (`scheduler`)	`software`
`traj`	trajectory (`trajectory`)	`acquisition`
`trajectory`	trajectory (`trajectory`)	`acquisition`
`vasp`	quantum chemistry (`quantum_chemistry`)	`technique`
`venv`	container runtime (`container_runtime`)	`software`
`walltime`	compute resource (`compute_resource`)	`measurement`
`wdl`	workflow manager (`workflow_manager`)	`software`
`zarr`	array format (`array_format`)	`format`
`zen_sw`	image software (`image_software`)	`software`